Transcript: NBAT1:3

Basic information

LNCipedia transcript ID: NBAT1:3 
LNCipedia gene ID: NBAT1
RefSeq ID: NR_034143
Location (hg19): chr6:22134831-22147422
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2295 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_034143; NR_034143.1
Alternative gene names: NBAT-1; NBAT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.1247 non-coding 
CPAT coding probability 29.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NBAT1:3 no no no no

Available literature

  1. Liu (2018), Effect of downregulated lncRNA NBAT1 on the biological behavior of glioblastoma cells., Eur Rev Med Pharmacol Sci
  2. Hu (2015), NBAT1 suppresses breast cancer metastasis by regulating DKK1 via PRC2., Oncotarget
  3. Pandey (2015), Fighting Neuroblastomas with NBAT1., Oncoscience
  4. Xue (2015), Decreased expression of long non-coding RNA NBAT-1 is associated with poor prognosis in patients with clear cell renal cell carcinoma., Int J Clin Exp Pathol
  5. Pandey (2014), The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation., Cancer Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRL-1:3
4.0 NBAT1:3
4.1 NBAT1:3
5.0 NBAT1:3
5.1 NBAT1:3
5.2 NBAT1:3