Transcript: NBR2:6

Basic information

LNCipedia transcript ID: NBR2:6 
LNCipedia gene ID: NBR2
Location (hg19): chr17:41296235-41297400
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1166 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1633:1
Alternative gene names: NCRNA00192


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.864 non-coding 
CPAT coding probability 38.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NBR2:6 no no no no

Available literature

  1. Liu (2016), LncRNA NBR2 engages a metabolic checkpoint by regulating AMPK under energy stress., Nat. Cell Biol.
  2. Suen (2005), Model of transcriptional regulation of the BRCA1-NBR2 bi-directional transcriptional unit., Biochim. Biophys. Acta
  3. Xu (1997), Isolation and characterisation of the NBR2 gene which lies head to head with the human BRCA1 gene., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 NBR2:6
4.1 NBR2:6
5.0 NBR2:6
5.1 NBR2:6
5.2 NBR2:6