Transcript: NBR2:8

Basic information

LNCipedia transcript ID: NBR2:8 
LNCipedia gene ID: NBR2
RefSeq ID: NR_003108
Location (hg19): chr17:41277600-41297130
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1371 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_003108.1
Alternative gene names: NBR2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.8538 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NBR2:8 no no no no

Available literature

  1. Liu (2016), LncRNA NBR2 engages a metabolic checkpoint by regulating AMPK under energy stress., Nat. Cell Biol.
  2. Suen (2005), Model of transcriptional regulation of the BRCA1-NBR2 bi-directional transcriptional unit., Biochim. Biophys. Acta
  3. Xu (1997), Isolation and characterisation of the NBR2 gene which lies head to head with the human BRCA1 gene., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 NBR2:8
5.1 NBR2:8
5.2 NBR2:8