Transcript: NDST1-AS1:9

Basic information

LNCipedia transcript ID: NDST1-AS1:9 
LNCipedia gene ID: NDST1-AS1
RefSeq ID: NR_105061
Location (hg19): chr5:149855079-149865555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 407 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105061; NR_105061.1
Alternative gene names: LOC102546298


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.1254 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NDST1-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS14-1:4
4.0 lnc-RPS14-1:4
4.1 lnc-RPS14-1:4
5.0 lnc-RPS14-1:4
5.1 NDST1-AS1:4
5.2 NDST1-AS1:9