Transcript: NEXN-AS1:2

Basic information

LNCipedia transcript ID: NEXN-AS1:2 
LNCipedia gene ID: NEXN-AS1
Location (hg19): chr1:78347044-78353374
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 731 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT004051; ENST00000597757.1
Alternative gene names: ENSG00000235927.2; NEXN-AS1; FLJ90637


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4568 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NEXN-AS1:2 no no no no

Available literature

  1. Yuan (2016), A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FUBP1-1:2
4.0 NEXN-AS1:2
4.1 NEXN-AS1:2
5.0 NEXN-AS1:2
5.1 NEXN-AS1:2
5.2 NEXN-AS1:2