Transcript: NFIA-AS1:1

Basic information

LNCipedia transcript ID: NFIA-AS1:1 
LNCipedia gene ID: NFIA-AS1
RefSeq ID: NR_104180
Location (hg19): chr1:61714617-61719190
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 392 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104180; NR_104180.1
Alternative gene names: RP5-833A20.1; NFIA-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.3493 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NFIA-AS1:1 yes no no no

Available literature

  1. Kang (2016), Long non-coding RNA RP5-833A20.1 inhibits proliferation, metastasis and cell cycle progression by suppressing the expression of NFIA in U251 cells., Mol Med Rep
  2. Holdt (2015), Long noncoding RNA-MicroRNA pathway controlling nuclear factor IA, a novel atherosclerosis modifier gene., Arterioscler. Thromb. Vasc. Biol.
  3. Hu (2015), RP5-833A20.1/miR-382-5p/NFIA-dependent signal transduction pathway contributes to the regulation of cholesterol homeostasis and inflammatory reaction., Arterioscler. Thromb. Vasc. Biol.
  4. Hu (2014), Genome-wide profiling to analyze the effects of Ox-LDL induced THP-1 macrophage-derived foam cells on gene expression., Genom Data


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM2D1-1:2
4.0 NFIA-AS1:1
4.1 NFIA-AS1:1
5.0 NFIA-AS1:1
5.1 NFIA-AS1:1
5.2 NFIA-AS1:1