Transcript: NGF-AS1:9

Basic information

LNCipedia transcript ID: NGF-AS1:9 
LNCipedia gene ID: NGF-AS1
Location (hg19): chr1:115825655-115910884
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2801 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT005387
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.102 non-coding 
CPAT coding probability 10.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NGF-AS1:9 no no no no

Available literature

  1. Hirata (2018), Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSHB-3:2
4.0 lnc-TSHB-3:2
4.1 lnc-TSHB-3:2
5.0 lnc-TSHB-3:2
5.1 NGF-AS1:5
5.2 NGF-AS1:9