Transcript: NIFK-AS1:11

Basic information

LNCipedia transcript ID: NIFK-AS1:11 
LNCipedia gene ID: NIFK-AS1
Location (hg19): chr2:122407565-122409113
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1266 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00002719
Alternative gene names: XLOC_001646; linc-TSN-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7296 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIFK-AS1:11 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSN-2:5
3.1 lnc-TSN-2:5
4.0 NIFK-AS1:11
4.1 NIFK-AS1:11
5.0 NIFK-AS1:11
5.1 NIFK-AS1:11
5.2 NIFK-AS1:11