Transcript: NIPBL-DT:12

Basic information

LNCipedia transcript ID: NIPBL-DT:12 
HGNC Gene Symbol: NIPBL-DT    
HGNC Full Gene Name: NIPBL divergent transcript
RefSeq ID: NR_046262
Location (hg19): chr5:36871463-36876796
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5334 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT147328; NR_046262; NR_046262.1
Alternative gene names: NIPBL-AS; NIPBL-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.382 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NIPBL-DT:12 no no no no

Available literature

  1. Zuin (2017), Regulation of the cohesin-loading factor NIPBL: Role of the lncRNA NIPBL-AS1 and identification of a distal enhancer element., PLoS Genet.
  2. Velmeshev (2013), Expression of non-protein-coding antisense RNAs in genomic regions related to autism spectrum disorders., Mol Autism


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf42-2:3
4.0 NIPBL-AS1:2
4.1 NIPBL-AS1:2
5.0 NIPBL-AS1:2
5.1 NIPBL-DT:3
5.2 NIPBL-DT:12