Transcript: NNT-AS1:5

Basic information

LNCipedia transcript ID: NNT-AS1:5 
LNCipedia gene ID: NNT-AS1
Location (hg19): chr5:43575425-43603206
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1040 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000513560; ENST00000513560.1; RP11-159F24.1-005; OTTHUMT00000367960.1
Alternative gene names: ENSG00000248092; RP11-159F24.1; ENSG00000248092.2; OTTHUMG00000162220.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 14.5768 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.178571429
seqAAMSSLGSHQNKETGLKTLIPESILPHIQNEIHAQRCQEESRQTGLSRLYKKHDASICFW
orfFrame7.025733851

In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:5 no no no no

Available literature

  1. Hua (2017), Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer., Biomed. Pharmacother.
  2. Wang (2017), Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAIP1-1:3
3.1 lnc-PAIP1-1:3
4.0 NNT-AS1:5
4.1 NNT-AS1:5
5.0 NNT-AS1:5
5.1 NNT-AS1:5
5.2 NNT-AS1:5