Transcript: NNT-AS1:6

Basic information

LNCipedia transcript ID: NNT-AS1:6 
HGNC Gene Symbol: NNT-AS1    
HGNC Full Gene Name: NNT antisense RNA 1
Ensembl Gene ID: ENSG00000248092
Ensembl Transcript ID: ENST00000513560
Location (hg19): chr5:43571696-43603206
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4769 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513560.2; ENST00000513560.6
Alternative gene names: ENSG00000248092.3; NNT-AS1; ENSG00000248092.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score 14.5768 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.178571429
seqAAMSSLGSHQNKETGLKTLIPESILPHIQNEIHAQRCQEESRQTGLSRLYKKHDASICFW
orfFrame7.025733851

In stringent set: no

Locus conservation

Locus conservation?
NNT-AS1:6 no no no no

Available literature

  1. Hua (2017), Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer., Biomed. Pharmacother.
  2. Wang (2017), Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAIP1-1:7
4.0 NNT-AS1:6
4.1 NNT-AS1:6
5.0 NNT-AS1:6
5.1 NNT-AS1:6
5.2 NNT-AS1:6