Transcript: NORAD:6

Basic information

LNCipedia transcript ID: NORAD:6 
LNCipedia gene ID: NORAD
Location (hg19): chr20:34633221-34635254
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2106_chr20:34633220-34635130_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9364 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NORAD:6 no no no no

Available literature

  1. Lee (2016), Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins., Cell
  2. Tichon (2016), A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells., Nat Commun
  3. Barry (2015), Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone., Front Neurol
  4. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  5. Michalik (2014), Long noncoding RNA MALAT1 regulates endothelial cell function and vessel growth., Circ. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SCAND1-1:5
4.0 NORAD:6
4.1 NORAD:6
5.0 NORAD:6
5.1 NORAD:6
5.2 NORAD:6