Transcript: NPSR1-AS1:15

Basic information

LNCipedia transcript ID: NPSR1-AS1:15 
LNCipedia gene ID: NPSR1-AS1
RefSeq ID: NR_033664
Location (hg19): chr7:34386124-34797884
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4859 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT120043; NR_033664; NR_033664.1
Alternative gene names: AAA1; IMAGE:4827585; NPSR1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0278 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NPSR1-AS1:15 yes no no no

Available literature

  1. Laitinen (2004), Characterization of a common susceptibility locus for asthma-related traits., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005493.1-1:15
4.0 NPSR1-AS1:15
4.1 NPSR1-AS1:15
5.0 NPSR1-AS1:15
5.1 NPSR1-AS1:15
5.2 NPSR1-AS1:15