Transcript: NRIR:3

Basic information

LNCipedia transcript ID: NRIR:3 
LNCipedia gene ID: NRIR
Location (hg19): chr2:6960200-6980496
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1294 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT068916
Alternative gene names: lncRNA-CMPK2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.978 non-coding 
CPAT coding probability 6.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NRIR:3 no no no no

Available literature

  1. Kambara (2014), Negative regulation of the interferon response by an interferon-induced long non-coding RNA., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMPK2-1:4
4.0 NRIR:3
4.1 NRIR:3
5.0 NRIR:3
5.1 NRIR:3
5.2 NRIR:3