Transcript: NTM-AS1:2

Basic information

LNCipedia transcript ID: NTM-AS1:2 
LNCipedia gene ID: NTM-AS1
RefSeq ID: NR_126159
Location (hg19): chr11:131532023-131533450
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 678 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126159; NR_126159.1
Alternative gene names: FLJ45436; NTM-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -250.1849 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NTM-AS1:2 yes no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf39-1:4
4.0 NTM-AS1:2
4.1 NTM-AS1:2
5.0 NTM-AS1:2
5.1 NTM-AS1:2
5.2 NTM-AS1:2