Transcript: NTM-AS1:4

Basic information

LNCipedia transcript ID: NTM-AS1:4 
LNCipedia gene ID: NTM-AS1
Location (hg19): chr11:131528207-131532850
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4004 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT025183
Alternative gene names: FLJ45436


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.1073 non-coding 
CPAT coding probability 24.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NTM-AS1:4 yes no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf39-1:2
4.0 NTM-AS1:4
4.1 NTM-AS1:4
5.0 NTM-AS1:4
5.1 NTM-AS1:4
5.2 NTM-AS1:4