Transcript: NUP50-DT:45

Basic information

LNCipedia transcript ID: NUP50-DT:45 
HGNC Gene Symbol: NUP50-DT    
HGNC Full Gene Name: NUP50 divergent transcript
Ensembl Gene ID: ENSG00000226328
Ensembl Transcript ID: ENST00000426282
Location (hg19): chr22:45528901-45559662
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2076 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426282.2; ENST00000426282.6
Alternative gene names: ENSG00000226328.2; CTA-217C2.1; ENSG00000226328.6; NUP50-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 71.937 coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NUP50-DT:45 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0930-2:8
4.0 NUP50-AS1:11
4.1 NUP50-AS1:11
5.0 NUP50-AS1:11
5.1 NUP50-DT:18
5.2 NUP50-DT:45