Transcript: NUP50-DT:52

Basic information

LNCipedia transcript ID: NUP50-DT:52 
LNCipedia gene ID: NUP50-DT
RefSeq ID: NR_038957
Location (hg19): chr22:45529639-45548465
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1313 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT087202; NR_038957; NR_038957.1
Alternative gene names: ; NUP50-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.2818 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUP50-DT:52 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0930-2:13
4.0 NUP50-AS1:16
4.1 NUP50-AS1:16
5.0 NUP50-AS1:16
5.1 NUP50-DT:25
5.2 NUP50-DT:52