Transcript: OSTM1-AS1:1

Basic information

LNCipedia transcript ID: OSTM1-AS1:1 
HGNC Gene Symbol: OSTM1-AS1    
HGNC Full Gene Name: OSTM1 antisense RNA 1
Ensembl Gene ID: ENSG00000225174
Ensembl Transcript ID: ENST00000426008
Location (hg19): chr6:108444719-108477902
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 717 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426008; TCONS_00011349; ENST00000426008.1; OSTM1-AS1-002; OTTHUMT00000041714.1; NONHSAT114331
Alternative gene names: ENSG00000225174; XLOC_005417; linc-NR2E1-1; RP3-429G5.3; ENSG00000225174.1; OSTM1-AS1; OTTHUMG00000015320.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -215.5824 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
OSTM1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR2E1-1:1
3.1 lnc-NR2E1-1:1
4.0 OSTM1-AS1:1
4.1 OSTM1-AS1:1
5.0 OSTM1-AS1:1
5.1 OSTM1-AS1:1
5.2 OSTM1-AS1:1