Transcript: PACERR:3

Basic information

LNCipedia transcript ID: PACERR:3 
LNCipedia gene ID: PACERR
Location (hg19): chr1:186649867-186650578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 712 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000273129.1|ENST00000608917.1
Alternative gene names: PACER; PTGS2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -149.9268 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACERR:3 no no no no

Available literature

  1. Krawczyk (2014), p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PACERR:3
5.0 PACERR:3
5.1 PACERR:3
5.2 PACERR:3