Transcript: PACRG-AS3:3

Basic information

LNCipedia transcript ID: PACRG-AS3:3 
HGNC Gene Symbol: PACRG-AS3    
HGNC Full Gene Name: PACRG antisense RNA 3
Ensembl Gene ID: ENSG00000225683
Ensembl Transcript ID: ENST00000620150
Location (hg19): chr6:163604408-163613023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620150.1
Alternative gene names: ENSG00000225683.5; PACRG-AS3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -138.8175 non-coding 
CPAT coding probability 13.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PACRG-AS3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PACRG-AS3:3
4.1 PACRG-AS3:3
5.0 PACRG-AS3:3
5.1 PACRG-AS3:3
5.2 PACRG-AS3:3