Transcript: PANCR:1

Basic information

LNCipedia transcript ID: PANCR:1 
LNCipedia gene ID: PANCR
Location (hg19): chr4:111516671-111536614
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000513690; ENST00000513690.1; RP11-380D23.2-002; OTTHUMT00000363858.1; NONHSAT097819
Alternative gene names: ENSG00000250103; RP11-380D23.2; ENSG00000250103.1; OTTHUMG00000161118.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7891 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANCR:1 no no no no

Available literature

  1. Gore-Panter (2016), PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression., Circ Arrhythm Electrophysiol
  2. Sailer (2016), PITX2 and PANCR DNA methylation predicts overall survival in patients with head and neck squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITX2-1:1
3.1 lnc-PITX2-1:1
4.0 PANCR:1
4.1 PANCR:1
5.0 PANCR:1
5.1 PANCR:1
5.2 PANCR:1