Transcript: PANCR:4

Basic information

LNCipedia transcript ID: PANCR:4 
LNCipedia gene ID: PANCR
Location (hg19): chr4:111525273-111527666
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT097821; FPKM1_group_23863_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.7989 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANCR:4 no no no no

Available literature

  1. Gore-Panter (2016), PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression., Circ Arrhythm Electrophysiol
  2. Sailer (2016), PITX2 and PANCR DNA methylation predicts overall survival in patients with head and neck squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PITX2-1:3
4.0 PANCR:4
4.1 PANCR:4
5.0 PANCR:4
5.1 PANCR:4
5.2 PANCR:4