Transcript: PAPPA-AS1:2

Basic information

LNCipedia transcript ID: PAPPA-AS1:2 
HGNC Gene Symbol: PAPPA-AS1    
HGNC Full Gene Name: PAPPA antisense RNA 1
Ensembl Gene ID: ENSG00000256040
Ensembl Transcript ID: ENST00000445861
RefSeq ID: NR_103711
Location (hg19): chr9:119160436-119162885
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2450 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445861.3; NR_103711.1
Alternative gene names: ENSG00000256040.2; PAPPA-AS1; PAPPA-AS; DIPAS; TAF4B; TAF2C2; TAFII105; NCRNA00156


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.6212 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAPPA-AS1:2 no no no no

Available literature

  1. GarcĂ­a (2005), Identification of two novel human genes, DIPLA1 and DIPAS, expressed in placenta tissue., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PAPPA-AS1:2
4.1 PAPPA-AS1:2
5.0 PAPPA-AS1:2
5.1 PAPPA-AS1:2
5.2 PAPPA-AS1:2