Transcript: PAPPA-AS2:1

Basic information

LNCipedia transcript ID: PAPPA-AS2:1 
LNCipedia gene ID: PAPPA-AS2
Ensembl Gene ID: ENSG00000244757
Ensembl Transcript ID: ENST00000451100
Location (hg19): chr9:119050897-119080968
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 728 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451100.1; RP11-45A16.4-001; OTTHUMT00000053799.2; NONHSAT134436
Alternative gene names: ENSG00000244757.1; RP11-45A16.4; OTTHUMG00000020555.2; AGU1; AL137024.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.5423 non-coding 
CPAT coding probability 19.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAPPA-AS2:1 no no no no

Available literature

  1. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAPPA-AS1-1:1
4.0 PAPPA-AS2:1
4.1 PAPPA-AS2:1
5.0 PAPPA-AS2:1
5.1 PAPPA-AS2:1
5.2 PAPPA-AS2:1