Transcript: PAPPA-AS2:2

Basic information

LNCipedia transcript ID: PAPPA-AS2:2 
HGNC Gene Symbol: PAPPA-AS2    
HGNC Full Gene Name: PAPPA antisense RNA 2
Ensembl Gene ID: ENSG00000226604
Ensembl Transcript ID: ENST00000438048
Location (hg19): chr9:119048108-119051048
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1854 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438048.1; RP11-45A16.3-001; OTTHUMT00000053798.1; NONHSAT134435
Alternative gene names: ENSG00000226604.2; RP11-45A16.3; OTTHUMG00000020554.1; PAPPA-AS2; AGU1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.5837 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAPPA-AS2:2 no no no no

Available literature

  1. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAPPA-AS1-1:2
4.0 PAPPA-AS2:2
4.1 PAPPA-AS2:2
5.0 PAPPA-AS2:2
5.1 PAPPA-AS2:2
5.2 PAPPA-AS2:2