Transcript: PAPPA-AS2:3

Basic information

LNCipedia transcript ID: PAPPA-AS2:3 
LNCipedia gene ID: PAPPA-AS2
Location (hg19): chr9:119048108-119051039
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1845 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226604.2|ENST00000438048.1
Alternative gene names: AGU1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.5837 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAPPA-AS2:3 no no no no

Available literature

  1. Kikuchi (2009), Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PAPPA-AS2:3
5.0 PAPPA-AS2:3
5.1 PAPPA-AS2:3
5.2 PAPPA-AS2:3