Transcript: PARAL1:5

Basic information

LNCipedia transcript ID: PARAL1:5 
HGNC Gene Symbol: PARAL1    
HGNC Full Gene Name: PPARG activating RBM14 associated lncRNA 1
Ensembl Gene ID: ENSG00000243961
Ensembl Transcript ID: ENST00000449270
Location (hg19): chr20:9966736-9987764
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1036 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027899; ENST00000449270.1; RP5-839B4.8-001; OTTHUMT00000077965.1; NONHSAT078568
Alternative gene names: XLOC_013457; linc-ANKRD5-1; ENSG00000243961.1; RP5-839B4.8; OTTHUMG00000031858.1; ENSG00000243961.2; AL109754.1; PARAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.0286 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PARAL1:5 no no no no

Available literature

  1. Firmin (2017), The RBM14/CoAA-interacting, long intergenic non-coding RNA Paral1 regulates adipogenesis and coactivates the nuclear receptor PPARγ., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD5-1:1
3.1 lnc-ANKRD5-1:1
4.0 lnc-ANKRD5-1:1
4.1 lnc-ANKRD5-1:1
5.0 lnc-ANKRD5-1:1
5.1 PARAL1:2
5.2 PARAL1:5