Transcript: PART1:20

Basic information

LNCipedia transcript ID: PART1:20 
LNCipedia gene ID: PART1
Location (hg19): chr5:59829747-59843653
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1825 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000152931.7|HBMT00001138622.1
Alternative gene names: DKFZP586D0823; NCRNA00206


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.0127 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:20 no no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PART1:20
5.0 PART1:20
5.1 PART1:20
5.2 PART1:20