Transcript: PART1:9

Basic information

LNCipedia transcript ID: PART1:9 
LNCipedia gene ID: PART1
Location (hg19): chr5:59784034-59817221
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 592 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000504876; TCONS_00009408; ENST00000504876.1; PART1-003; OTTHUMT00000368803.1
Alternative gene names: ENSG00000152931; XLOC_004399; linc-NDUFAF2-3; PART1; ENSG00000152931.6; OTTHUMG00000162213.2; DKFZP586D0823; NCRNA00206


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.7457 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:9 yes no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC109486.1-1:4
3.1 lnc-AC109486.1-1:4
4.0 PART1:9
4.1 PART1:9
5.0 PART1:9
5.1 PART1:9
5.2 PART1:9