Transcript: PAUPAR:15

Basic information

LNCipedia transcript ID: PAUPAR:15 
LNCipedia gene ID: PAUPAR
RefSeq ID: NR_117094
Location (hg19): chr11:31848114-31850850
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2737 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_117094; NR_117094.1
Alternative gene names: PAUPAR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.8032 non-coding 
CPAT coding probability 18.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAUPAR:15 yes no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELP4-3:2
4.0 lnc-ELP4-3:2
4.1 lnc-ELP4-3:2
5.0 lnc-ELP4-3:2
5.1 PAUPAR:8
5.2 PAUPAR:15