Transcript: PAXBP1-AS1:4

Basic information

LNCipedia transcript ID: PAXBP1-AS1:4 
HGNC Gene Symbol: PAXBP1-AS1    
HGNC Full Gene Name: PAXBP1 antisense RNA 1
Ensembl Gene ID: ENSG00000238197
Ensembl Transcript ID: ENST00000458479
Location (hg19): chr21:34100426-34105227
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2945 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458479; ENST00000458479.1; GCFC1-AS1-001; OTTHUMT00000139562.2; NONHSAT081742
Alternative gene names: ENSG00000238197; GCFC1-AS1; ENSG00000238197.1; OTTHUMG00000064979.3; PAXBP1-AS1; ENSG00000238197.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.9905 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXBP1-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf49-1:1
3.1 lnc-C21orf49-1:1
4.0 PAXBP1-AS1:4
4.1 PAXBP1-AS1:4
5.0 PAXBP1-AS1:4
5.1 PAXBP1-AS1:4
5.2 PAXBP1-AS1:4