Transcript: PAXIP1-AS1:1

Basic information

LNCipedia transcript ID: PAXIP1-AS1:1 
HGNC Gene Symbol: PAXIP1-AS1    
HGNC Full Gene Name: PAXIP1 antisense RNA 1 (head to head)
RefSeq ID: NR_028090
Location (hg19): chr7:154795143-154797413
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2271 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT124330; NR_028090; NR_028090.1
Alternative gene names: ; PAXIP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.5369 non-coding 
CPAT coding probability 16.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAXIP1-AS1:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC093726.6.1-1:10
4.0 PAXIP1-AS1:1
4.1 PAXIP1-AS1:1
5.0 PAXIP1-AS1:1
5.1 PAXIP1-AS1:1
5.2 PAXIP1-AS1:1