Transcript: PCAT14:4

Basic information

LNCipedia transcript ID: PCAT14:4 
LNCipedia gene ID: PCAT14
RefSeq ID: NR_109832
Location (hg19): chr22:23880289-23889493
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1201 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109832.1
Alternative gene names: PCAT14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.5263 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT14:4 no no no no

Available literature

  1. White (2017), Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer., Eur. Urol.
  2. Prensner (2011), Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression., Nat. Biotechnol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PCAT14:4
5.1 PCAT14:4
5.2 PCAT14:4