Transcript: PCAT14:7

Basic information

LNCipedia transcript ID: PCAT14:7 
HGNC Gene Symbol: PCAT14    
HGNC Full Gene Name: prostate cancer associated transcript 14
Ensembl Gene ID: ENSG00000280623
Ensembl Transcript ID: ENST00000626825
Location (hg19): chr22:23879086-23889354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1077 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626825.1
Alternative gene names: ENSG00000280623.1; PCAT14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 33.5263 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT14:7 no no no no

Available literature

  1. White (2017), Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer., Eur. Urol.
  2. Prensner (2011), Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression., Nat. Biotechnol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RGL4-6:2
4.1 lnc-RGL4-6:2
5.0 lnc-RGL4-6:2
5.1 PCAT14:3
5.2 PCAT14:7