Transcript: PCAT19:28

Basic information

LNCipedia transcript ID: PCAT19:28 
LNCipedia gene ID: PCAT19
Location (hg19): chr19:41961934-41985049
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000267107.2|ENST00000598215.1
Alternative gene names: LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.5698 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:28 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PCAT19:28
5.0 PCAT19:28
5.1 PCAT19:28
5.2 PCAT19:28