Transcript: PCAT19:30

Basic information

LNCipedia transcript ID: PCAT19:30 
LNCipedia gene ID: PCAT19
RefSeq ID: NR_040109
Location (hg19): chr19:41960074-42006559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3477 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040109.2
Alternative gene names: PCAT19


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.7376 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:30 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PCAT19:30
5.1 PCAT19:30
5.2 PCAT19:30