Transcript: PCCA-AS1:3

Basic information

LNCipedia transcript ID: PCCA-AS1:3 
HGNC Gene Symbol: PCCA-AS1    
HGNC Full Gene Name: PCCA antisense RNA 1
Ensembl Gene ID: ENSG00000234650
Ensembl Transcript ID: ENST00000455958
Location (hg19): chr13:101131801-101133269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 356 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455958.1; PCCA-AS1-003; OTTHUMT00000045637.1; NONHSAT034962; ENST00000455958.5
Alternative gene names: ENSG00000234650.1; PCCA-AS1; OTTHUMG00000017286.1; ENSG00000234650.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.6284 non-coding 
CPAT coding probability 9.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCCA-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-A2LD1-1:2
4.0 PCCA-AS1:3
4.1 PCCA-AS1:3
5.0 PCCA-AS1:3
5.1 PCCA-AS1:3
5.2 PCCA-AS1:3