Transcript: PCDH9-AS2:2

Basic information

LNCipedia transcript ID: PCDH9-AS2:2 
LNCipedia gene ID: PCDH9-AS2
Location (hg19): chr13:67433130-67489163
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 461 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000419371.1; PCDH9-AS2-001; OTTHUMT00000045211.1; NONHSAT034213
Alternative gene names: ENSG00000228842.1; PCDH9-AS2; OTTHUMG00000017037.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.339 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCDH9-AS2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL445989.1-14:1
4.0 PCDH9-AS2:2
4.1 PCDH9-AS2:2
5.0 PCDH9-AS2:2
5.1 PCDH9-AS2:2
5.2 PCDH9-AS2:2