Transcript: PCOLCE-AS1:2

Basic information

LNCipedia transcript ID: PCOLCE-AS1:2 
HGNC Gene Symbol: PCOLCE-AS1    
HGNC Full Gene Name: PCOLCE antisense RNA 1
Ensembl Gene ID: ENSG00000224729
Ensembl Transcript ID: ENST00000442166
Location (hg19): chr7:100187025-100201661
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2537 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442166.2; RP13-530H6.2-001; OTTHUMT00000356401.1
Alternative gene names: ENSG00000224729.4; RP13-530H6.2; OTTHUMG00000156674.2; PCOLCE-AS1; ENSG00000224729.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 140.099 coding 
CPAT coding probability 99.17% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PCOLCE-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH4-1:2
4.0 PCOLCE-AS1:2
4.1 PCOLCE-AS1:2
5.0 PCOLCE-AS1:2
5.1 PCOLCE-AS1:2
5.2 PCOLCE-AS1:2