Transcript: PCOLCE-AS1:4

Basic information

LNCipedia transcript ID: PCOLCE-AS1:4 
LNCipedia gene ID: PCOLCE-AS1
Location (hg19): chr7:100190490-100200658
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1180 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000544873.1; RP13-530H6.2-201; NONHSAT122391
Alternative gene names: ENSG00000224729.4; RP13-530H6.2; OTTHUMG00000156674.2; PCOLCE-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.3621 non-coding 
CPAT coding probability 80.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PCOLCE-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH4-1:3
4.0 PCOLCE-AS1:4
4.1 PCOLCE-AS1:4
5.0 PCOLCE-AS1:4
5.1 PCOLCE-AS1:4
5.2 PCOLCE-AS1:4