Transcript: PCSK6-AS1:1

Basic information

LNCipedia transcript ID: PCSK6-AS1:1 
HGNC Gene Symbol: PCSK6-AS1    
HGNC Full Gene Name: PCSK6 antisense RNA 1
Ensembl Gene ID: ENSG00000259764
Ensembl Transcript ID: ENST00000558696
Location (hg19): chr15:101874642-101877633
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 639 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558696.1; RP11-299G20.3-001; OTTHUMT00000416803.1; NONHSAT051182
Alternative gene names: ENSG00000259764.1; RP11-299G20.3; OTTHUMG00000172093.1; PCSK6-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.3524 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCSK6-AS1:1 yes no no no

Available literature

  1. Shore (2016), The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRK1-4:1
4.0 PCSK6-AS1:1
4.1 PCSK6-AS1:1
5.0 PCSK6-AS1:1
5.1 PCSK6-AS1:1
5.2 PCSK6-AS1:1