Transcript: PCSK6-AS1:2

Basic information

LNCipedia transcript ID: PCSK6-AS1:2 
LNCipedia gene ID: PCSK6-AS1
RefSeq ID: NR_132373
Location (hg19): chr15:101874642-101877636
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 642 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_132373.1
Alternative gene names: PCSK6-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.3524 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCSK6-AS1:2 yes no no no

Available literature

  1. Shore (2016), The handedness-associated PCSK6 locus spans an intronic promoter regulating novel transcripts., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PCSK6-AS1:2
5.1 PCSK6-AS1:2
5.2 PCSK6-AS1:2