Transcript: PDZRN3-AS1:2

Basic information

LNCipedia transcript ID: PDZRN3-AS1:2 
LNCipedia gene ID: PDZRN3-AS1
Location (hg19): chr3:73672719-73674658
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000478988.1; PDZRN3-AS1-001; OTTHUMT00000352459.2
Alternative gene names: ENSG00000239677.1; PDZRN3-AS1; OTTHUMG00000158864.2; ENSG00000239677.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.2108 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDZRN3-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R2-1:1
4.0 PDZRN3-AS1:2
4.1 PDZRN3-AS1:2
5.0 PDZRN3-AS1:2
5.1 PDZRN3-AS1:2
5.2 PDZRN3-AS1:2