Transcript: PDZRN3-AS1:4

Basic information

LNCipedia transcript ID: PDZRN3-AS1:4 
LNCipedia gene ID: PDZRN3-AS1
RefSeq ID: NR_046681
Location (hg19): chr3:73672719-73677050
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2886 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046681; NR_046681.1
Alternative gene names: ; PDZRN3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.1232 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDZRN3-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R2-1:6
4.0 PDZRN3-AS1:4
4.1 PDZRN3-AS1:4
5.0 PDZRN3-AS1:4
5.1 PDZRN3-AS1:4
5.2 PDZRN3-AS1:4