Transcript: PEG13:1

Basic information

LNCipedia transcript ID: PEG13:1 
LNCipedia gene ID: PEG13
Location (hg19): chr8:141104993-141109236
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4244 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000631594.1
Alternative gene names: ENSG00000282164.1; PEG13;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.5398 non-coding 
CPAT coding probability 85.54% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PEG13:1 yes no no no

Available literature

  1. Court (2014), Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment., Genome Res.
  2. Court (2014), The PEG13-DMR and brain-specific enhancers dictate imprinted expression within the 8q24 intellectual disability risk locus., Epigenetics Chromatin
  3. Sánchez Delgado (2014), Screening individuals with intellectual disability, autism and Tourette's syndrome for KCNK9 mutations and aberrant DNA methylation within the 8q24 imprinted cluster., Am. J. Med. Genet. B Neuropsychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PEG13:1
4.1 PEG13:1
5.0 PEG13:1
5.1 PEG13:1
5.2 PEG13:1