Transcript: PEG13:2

Basic information

LNCipedia transcript ID: PEG13:2 
HGNC Gene Symbol: PEG13    
HGNC Full Gene Name: paternally expressed 13
Ensembl Gene ID: ENSG00000282164
Ensembl Transcript ID: ENST00000631594
Location (hg19): chr8:141104993-141110659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5667 bp
Exons: 1
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000631594.2
Alternative gene names: ENSG00000282164.2; PEG13;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.5398 non-coding 
CPAT coding probability 73.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PEG13:2 yes no no no

Available literature

  1. Court (2014), Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment., Genome Res.
  2. Court (2014), The PEG13-DMR and brain-specific enhancers dictate imprinted expression within the 8q24 intellectual disability risk locus., Epigenetics Chromatin
  3. Sánchez Delgado (2014), Screening individuals with intellectual disability, autism and Tourette's syndrome for KCNK9 mutations and aberrant DNA methylation within the 8q24 imprinted cluster., Am. J. Med. Genet. B Neuropsychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PEG13:2
5.0 PEG13:2
5.1 PEG13:2
5.2 PEG13:2