Transcript: PGM5P3-AS1:7

Basic information

LNCipedia transcript ID: PGM5P3-AS1:7 
LNCipedia gene ID: PGM5P3-AS1
Location (hg19): chr9:72701-88826
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 394 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000429980.1; RP11-143M1.2-002; OTTHUMT00000051453.1; NONHSAT129889
Alternative gene names: ENSG00000225655.1; RP11-143M1.2; OTTHUMG00000019423.1; FAM233B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5526 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P3-AS1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOCK8-3:1
4.0 PGM5P3-AS1:7
4.1 PGM5P3-AS1:7
5.0 PGM5P3-AS1:7
5.1 PGM5P3-AS1:7
5.2 PGM5P3-AS1:7