Transcript: PGM5P4-AS1:7

Basic information

LNCipedia transcript ID: PGM5P4-AS1:7 
HGNC Gene Symbol: PGM5P4-AS1    
HGNC Full Gene Name: PGM5P4 antisense RNA 1
Ensembl Gene ID: ENSG00000231943
Ensembl Transcript ID: ENST00000450636
Location (hg19): chr2:114297629-114300242
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450636; ENST00000450636.1; AL078621.4-002; OTTHUMT00000109024.1; NONHSAT073792
Alternative gene names: ENSG00000231943; AL078621.4; ENSG00000231943.2; OTTHUMG00000047818.3; ENSG00000231943.3; RP11-395L14.4; ENSG00000231943.7; PGM5P4-AS1; FAM233C


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0932 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P4-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC016745.1-1:3
3.1 lnc-AC016745.1-1:2
4.0 PGM5P4-AS1:7
4.1 PGM5P4-AS1:7
5.0 PGM5P4-AS1:7
5.1 PGM5P4-AS1:7
5.2 PGM5P4-AS1:7