Transcript: PGR-AS1:10

Basic information

LNCipedia transcript ID: PGR-AS1:10 
LNCipedia gene ID: PGR-AS1
Location (hg19): chr11:101079636-101080181
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 1
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_5210_transcript_10
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5204 non-coding 
CPAT coding probability 9.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGR-AS1:10 no no no no

Available literature

  1. Schwartz (2008), Antisense transcripts are targets for activating small RNAs., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM133-3:4
4.0 lnc-TMEM133-3:4
4.1 lnc-TMEM133-3:4
5.0 lnc-TMEM133-3:4
5.1 PGR-AS1:6
5.2 PGR-AS1:10